Protein Info for Atu0971 in Agrobacterium fabrum C58

Annotation: two component sensor kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 466 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 173 to 196 (24 residues), see Phobius details PF02518: HATPase_c" amino acids 347 to 452 (106 residues), 56.5 bits, see alignment E=1.8e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0971)

Predicted SEED Role

"Sensor histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJN1 at UniProt or InterPro

Protein Sequence (466 amino acids)

>Atu0971 two component sensor kinase (Agrobacterium fabrum C58)
MRSNSLTARVLLLASAWSALALVVIAVVISTLYRQGVERSFTDLLRAQLYNVINSVTISN
ENTLAGSPQLGDLRFSQPDTGWYWVVEPLGNFQTAPLVSSSLGVSTLPVPSIIDAPFDNR
YERFYAVTDEAGNQVRVAETEVVLDGEGRAARFRVSGNLNVVEDDVRDFSNSLYLALAVF
GVGSLVVNGLAILYSLRPLDQARRALGKIRGGEAESLEGEFPREIQPLANEVNALIDSNR
RLVERARMQVGNLAHSLKTPIAVLLNEARTLEPQHGDLVRAQADAMQAQVQSYLSRARIA
AQRGSILARVEAEPALERLVRVMRRLNPDKQFVLNFEQPGAVLGMEQQDLEEVVGNLLEN
AARFAETRVVVTLATGTHPSSDAEIGRRSWVELTVEDDGPGLEPGQISEAMKRGRRLDES
RPGTGLGLSIVSEVVSEYHGRFSLSRSAIGGLKADLILPGLSKELA