Protein Info for Atu0967 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1266 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13547: GTA_TIM" amino acids 410 to 698 (289 residues), 454.8 bits, see alignment E=1.4e-140 PF13550: Phage-tail_3" amino acids 758 to 923 (166 residues), 139.1 bits, see alignment E=1.3e-44

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0967)

Predicted SEED Role

"Gene Transfer Agent host specificity protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJN3 at UniProt or InterPro

Protein Sequence (1266 amino acids)

>Atu0967 hypothetical protein (Agrobacterium fabrum C58)
MATIVFQAAGAALGGIFGPVGAIIGRAAGALAGNAVDRALLSDGRTVAGARLSTARIPGA
DEGAAINRLYGTARIGGTLIWATRFDESVEVQRRGGKGNRGPKVESFRYFANLAIGLCEG
EAALVRRIWADGREVDLTGVEMRFYPGSETQLPDPLIEARQGTGNTPAFRGLAYAVFERL
PLESYGNRIPLMQFEVVRPVGKLERQIRAITVIPGATEHGYATTQVSERTGIGQSRIMNR
NNLTAATDWQAAIDELQALCPNLKSVALVVSWFGTDMRAGECRILPGVEVAGRDGETTPW
SVAGLSRGDAHLVSHHGAGPAYGGTPDDASVLQAIADLKARGLRVCLYPFVMMDVPAGNG
LPDPYGDREQAAYGWRGRVTGFPAPGKAGSPDRSAAARAQVSAFCNREDGYRRMVLHYAA
LAARAGGVDAFLIGSELRGLTALRDQNDAFPFVEELVRLARDVRSIVGPATKLTYAADWS
EYFGHQPADGSGDVFFHLDPLWASPDIDAIGIDNYMPLSDWRDEDAANGNPDGMTGPDDA
SAFRRAITAGEGFDWYYASDADRAARRRTPITDGLKGKPWVFRYKDLRNWWGNLHYERVR
GVEKSVPTAWVPGTKPIWFTELGCPAVDKSATRPNVFPDPKSAENAFPYFSRRSRADSQQ
RRFLEAHLDHWGEGETAMVDKGRVYLWTWDARPFPAFPQNGAVWSDGANWRTGHWLNGRL
GTATLADTIAAILTDHGFSAFDVSAVSGDLTGYVQGDITSARNLLEPLMAAFQVDVAEDG
GTLRFRSRNTAVMLVRDIAVLADIEDEPLWSENRGHDSDFAAEAVLTSFNPALDYEQASA
RSRRIDNAGSRLLRLDLNAALPAETAEAAVEALLRDNRQARRSLRFALPPSDITLEPGDC
IRLSEGVFPQAPAGRFLVSRIEDGAVRQVEARAFSPAFSAAAGGAEERRSAGASGAEGFA
PEVLFLDLPYYDGAAPEQSARIASFAKPWRPIVVSSSSGTEGYRQRVLLDRAAMIGALAQ
PLVGGASGRFDRKNTILIDLPAGEVSSAAELSVLNGENRLAIKAANGVWEIVAFAKAEEI
APSRWRLSSLLRGLAGTEDALAAGAPKGAPVVVLDAAVQPLGLAANERGRRLNWIAEAAG
MAGAPAGPFAFEGGVRAQTPLAPVHLSGKRRRDGILLQWKRRGRVEADGWDASDIPLDEP
FELYRVEVLDSGTVRRAVEVPEPFWLYPAGDELTDFPQLRDHISVRVRQLGRAVPLGVVS
QALLPL