Protein Info for Atu0927 in Agrobacterium fabrum C58

Annotation: LysE family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 37 to 59 (23 residues), see Phobius details amino acids 71 to 89 (19 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 148 to 167 (20 residues), see Phobius details amino acids 179 to 200 (22 residues), see Phobius details PF01810: LysE" amino acids 14 to 200 (187 residues), 126 bits, see alignment E=6.9e-41

Best Hits

Swiss-Prot: 40% identical to ARGO_SALSV: Arginine exporter protein ArgO (argO) from Salmonella schwarzengrund (strain CVM19633)

KEGG orthology group: K06895, L-lysine exporter family protein LysE/ArgO (inferred from 100% identity to atu:Atu0927)

Predicted SEED Role

"Transporter, LysE family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJQ1 at UniProt or InterPro

Protein Sequence (202 amino acids)

>Atu0927 LysE family transporter (Agrobacterium fabrum C58)
MDIQIFFTGLTMGLSLIVAIGAQNAFVLKQGLARSHVFAVCATCAISDALLIMVGVFGFQ
RISAIMPALDPIMRYAGAAFLIWYGAKSLYSALRSSEVLSVAERREASLWQTLAICLALT
FLNPHVYLDTVVLLGTISTQFPGFEKTFAAGAATGSLLFFFSLGYGARWLRPIFEKPSAW
RILEGVIAITMWAIAFKLVMGA