Protein Info for Atu0905 in Agrobacterium fabrum C58

Annotation: dnaK suppressor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 PF21173: DksA-like_N" amino acids 6 to 70 (65 residues), 105.3 bits, see alignment E=1.4e-34 PF01258: zf-dskA_traR" amino acids 73 to 104 (32 residues), 41.9 bits, see alignment E=7.8e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0905)

Predicted SEED Role

"DnaK suppressor protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UGY0 at UniProt or InterPro

Protein Sequence (106 amino acids)

>Atu0905 dnaK suppressor protein (Agrobacterium fabrum C58)
MNVESYEKILRDRQRELYRRLHKIEADFEEPRNPDDEDRASERSNDEVLDELGQVGQDEL
RAIDAALARIASGTFGTCVKCGKRISEDRLKAVPYTPFCQECAAAL