Protein Info for Atu0801 in Agrobacterium fabrum C58

Annotation: chromosome segregation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1155 PF02463: SMC_N" amino acids 4 to 1138 (1135 residues), 200.5 bits, see alignment E=4.9e-63 PF13476: AAA_23" amino acids 5 to 212 (208 residues), 55.6 bits, see alignment E=2.4e-18

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 100% identity to atu:Atu0801)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0M8 at UniProt or InterPro

Protein Sequence (1155 amino acids)

>Atu0801 chromosome segregation protein (Agrobacterium fabrum C58)
MKFNKLRVVGFKSFVEPSEFIIEPGLTGVVGPNGCGKSNLVEALRWVMGENSYKNMRASG
MDDVIFSGSGNRPARNTAEVGLYLDNSDRTAPAAFNDADEIQVTRRIERENGSVYRINGK
EARAKDVQLLFADASTGARSPSMVGQGRIGELINAKPQARRQLLEEAAGISGLHSRRHEA
ELRLRAAETNLERLEDVTAQLESQIESLKRQARQANRFKMLSADIRAREATLLHIRWVEA
KEAEGEAESALNQATNIVAEKAQGQMEAAKQQGIASLKLPELREDEARVAAALQRLQIAR
TQLDDEANRLLRRRDELARRLSQLGEDIVREERLVADNAQILARLDEEEAELLDILSDSG
RHADEMREAFEAAAVKLAESEAVFTSITAERAEAAAGRQQLERAIRDLSDRKLRLERQSQ
EASAEIDTIDEKLSGLPDPAERREAVEAAEIAVEDALIVAEEAEAAVAEARSAEALARGP
LETAKNRLNALDTEARTITKMLATSAAANGSFTPVAEEMTVERGYEAALGAALGDDLESP
LDASAPAYWGGNGNGADDPGLPQGAKPLLDYAQAPDALRRALAQIGVVADVSEARRLLPS
LKAGQRLVTREGALFRWDGHIASADAPGAAALRLSQKNRLAEIEAELDEARSILEEAEDQ
LAAKTEDIRSSELRLSEVRDRSRLATRQLAEAREALTSAERASGDLLRRRDVVSEAQNQI
GAQIDEIAVQEENARIEMEDAPDLSVLDLRLRESQLEVATDRGLLAEARARHEGVSREAE
SRQRRIQAIGQERSTWASRAASAADHIATLREREEEAREEIAELDIAPEEFDEKRRNLLN
ELQKTEDARRAAADRLAEAENLQRAADRVAATALSELAEAREKRGRAEERLVSAREKRLE
TEHRIRETLNTEPHMAFRLTGLGPDQPKPDIRDVERDLDRLKIERERLGAVNLRAEEEQA
ELSGKLEALIKERDDIIDAVRKLRAGIQSLNREGRERLIAAFDVVNSQFQRLFTHLFGGG
TAELQLIESDDPLEAGLEILARPPGKKPQTMTLLSGGEQALTAMALIFAVFLTNPAPICV
LDEVDAPLDDHNVERYCNLMDEMVASTETRFVIITHNPITMARMNRLFGVTMAEQGVSQL
VSVDLQTAEQLREAV