Protein Info for Atu0781 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 PF02622: DUF179" amino acids 24 to 188 (165 residues), 171.6 bits, see alignment E=6.4e-55

Best Hits

Swiss-Prot: 100% identical to Y781_AGRFC: UPF0301 protein Atu0781 (Atu0781) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 100% identity to atu:Atu0781)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UHA2 at UniProt or InterPro

Protein Sequence (201 amino acids)

>Atu0781 hypothetical protein (Agrobacterium fabrum C58)
MSFSTLMDKRERGSFDSQFLIAMPGLDDGNFARSVIYICAHSDAGAMGFIINRPQQITFT
DILLHLKLVDSNDAIMLPNRTREFPIQCGGPVESGRGFVLHSDDYLSESSIPVSDDISLT
ATLDIVRAISNGRGPQKATMMLGYAGWGPGQLENEIANNGWLNCPAAEELIFDRGLDNKY
ERALALMGVDARMLSTDAGHA