Protein Info for Atu0773 in Agrobacterium fabrum C58

Annotation: surfeit 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 217 to 236 (20 residues), see Phobius details PF02104: SURF1" amino acids 17 to 225 (209 residues), 164.6 bits, see alignment E=1.9e-52

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0773)

Predicted SEED Role

"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJX1 at UniProt or InterPro

Protein Sequence (244 amino acids)

>Atu0773 surfeit 1 (Agrobacterium fabrum C58)
MKAAQRRVWFAAPLVLLALAILLGLGTWQVKRLYWKEALMADIEERRNASPATLSDIEAI
VKSGGEIEYRKVRLSGTFDHTRERHFFATHQGQTGYYIYTPLTLADGRILFVNRGFVPFE
MKEAAKRPDGQVSGEVTITGLARAPLVAKPSSLLPDNDIAKNIFYWKDLAAMASSAEVPP
ERLVKLFVDADNAPNPGGWPQGGVTLIDLPNNHLQYAITWYGLAAALVIVAGFAYFRNGK
AQGE