Protein Info for Atu0772 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 transmembrane" amino acids 59 to 77 (19 residues), see Phobius details amino acids 85 to 104 (20 residues), see Phobius details PF06170: DUF983" amino acids 32 to 116 (85 residues), 121.9 bits, see alignment E=5.6e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0772)

Predicted SEED Role

"conserved hypothetical protein in cyt c oxidase gene clusters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0Q1 at UniProt or InterPro

Protein Sequence (128 amino acids)

>Atu0772 hypothetical protein (Agrobacterium fabrum C58)
MSEPSNGNFAPVDPIKVGLKGCCPRCGNGRLFDGFLTPKPACSACGLDYGFADAGDGPAV
FVMLIVGFLVVGMALWVDQRFAPPVWAHVMLWLPFTVIVSLVLLRKLKGIMIALQYRNNA
SEGRLDRE