Protein Info for Atu0710 in Agrobacterium fabrum C58

Annotation: magnesium/cobalt transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 256 to 274 (19 residues), see Phobius details amino acids 282 to 304 (23 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details PF01544: CorA" amino acids 43 to 338 (296 residues), 174.2 bits, see alignment E=2.1e-55

Best Hits

KEGG orthology group: K03284, metal ion transporter, MIT family (inferred from 100% identity to atu:Atu0710)

Predicted SEED Role

"Magnesium and cobalt transport protein CorA" in subsystem Campylobacter Iron Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK05 at UniProt or InterPro

Protein Sequence (342 amino acids)

>Atu0710 magnesium/cobalt transport protein (Agrobacterium fabrum C58)
MLSSIAADACDVERRNGLIKAYRANCEAISLSTDDGSGPIPDDIVWIDLVNPDRAEEQRV
EKLLGVELPTREDLKDIEPSSRLYMEDGNVFMTASLVWKADSDDPRLTDIAFILIGKRLV
TIRYAEPKSFHLFIAAITRAPHEMRSGTALLLKLLETIVDRTAEILENSVTGIDNLAADI
LGSQARSKRKAPRYLEDRLTNIAAYHRLISKLRVSLASLARLQTFLSTSDQAREDKGAKE
QGKSVGRDIQSLNEHASFVSGNLTFLLDASLGIINIEQNGIIKIFSIASVVFLPPTLVAS
VYGMNFQLMPELNWTFGYPLALVVMLMSAIIPFLFFRWKGWL