Protein Info for Atu0648 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 774 PF09371: Tex_N" amino acids 12 to 194 (183 residues), 236.9 bits, see alignment E=5.5e-74 PF16921: Tex_YqgF" amino acids 325 to 454 (130 residues), 172.2 bits, see alignment E=2.4e-54 PF14639: YqgF" amino acids 339 to 461 (123 residues), 36.9 bits, see alignment E=1.3e-12 PF14635: HHH_7" amino acids 468 to 560 (93 residues), 32.4 bits, see alignment E=4.1e-11 PF12836: HHH_3" amino acids 494 to 558 (65 residues), 98.4 bits, see alignment E=8.3e-32 PF03934: T2SSK" amino acids 499 to 547 (49 residues), 25 bits, see alignment 7.8e-09 PF17674: HHH_9" amino acids 564 to 633 (70 residues), 88.1 bits, see alignment E=2.3e-28 PF00575: S1" amino acids 652 to 723 (72 residues), 73.6 bits, see alignment E=5.5e-24

Best Hits

KEGG orthology group: K06959, uncharacterized protein (inferred from 100% identity to atu:Atu0648)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D110 at UniProt or InterPro

Protein Sequence (774 amino acids)

>Atu0648 hypothetical protein (Agrobacterium fabrum C58)
MTADNARLASLIASEINARPDQVKAAVALLDEGATVPFIARYRKEVTGGLDDTQLRTLAE
RLVYLRELNARRASIVDSITGQGKMTDELMVKIMQAGTKAELEDLYLPYKPKRRTRAEIA
RERGLGPLAEAIWENRAADPAKLAEAYVKGEVADVKAALEGARDIVAETMTENADLLGRL
RDYMRRNATFRAKVVDGKQATGEKFSDYFDHSERWATVPGHRALAMLRGWNEEVLTLTID
VDADDPSPVKPSQRTIAAAFDIRSAGPADQWLMEVAGWTWRVKLSMSLSLDLMRELRERA
EEEAINVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPK
NDVRGTQAELASLIRKHNVELIAIGNGTGSRETEKLVADLLAQLPASASGAKPTKVIVSE
AGASVYSASERAAAEFPNLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQG
RLSRSLDAVVEDAVNAVGVDLNTASSPLLARVSGLGSSIADAIVAHRDQTGPFASRKELL
KVPRLGQRTFEQCAGFLRIPNGKEPLDSSSVHPEAYGVAKKIVAACGRDLRSLMGDSAAL
KALDPKRFIDEQFGLPTVKDIIAELEKPGRDPRPSFKTATFADGVDEITDLKPGMLLEGT
VTNVAAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVKVRVVEVDVKRKRIGL
TMRKDGGEAVPQPMREKNNAGAMRHATAKPKERNEGSQSGGALAAALAEAMKRR