Protein Info for Atu0641 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details amino acids 23 to 23 (1 residues), see Phobius details transmembrane" amino acids 20 to 22 (3 residues), see Phobius details PF04011: LemA" amino acids 32 to 183 (152 residues), 198 bits, see alignment E=3.6e-63

Best Hits

Swiss-Prot: 48% identical to LEMA_STRGC: Protein LemA (lemA) from Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)

KEGG orthology group: K03744, LemA protein (inferred from 100% identity to atu:Atu0641)

Predicted SEED Role

"LemA protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK41 at UniProt or InterPro

Protein Sequence (183 amino acids)

>Atu0641 hypothetical protein (Agrobacterium fabrum C58)
MFITLAIIAAIALYVVFIYNGLVKARQMKEEAWSGIDVQLKRRADLIPNLIETVKGYAAH
EKTTFEEVIAMRNRAQAVPAGDVEGRAQAEGLLSQALGKLFALAEAYPDLKANTNFLELQ
RSLETIEGELQMSRRYYNGAARDLNVKVESFPSNLVAGQFGFAKAPYFEIDNPADRAVPT
VKF