Protein Info for Atu0611 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 transmembrane" amino acids 15 to 39 (25 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 122 to 143 (22 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 221 to 242 (22 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 104 to 292 (189 residues), 62 bits, see alignment E=3.2e-21

Best Hits

KEGG orthology group: K11075, putrescine transport system permease protein (inferred from 100% identity to atu:Atu0611)

Predicted SEED Role

"Putrescine transport system permease protein PotH (TC 3.A.1.11.2)" in subsystem Polyamine Metabolism (TC 3.A.1.11.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D138 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Atu0611 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MAITTPENRQSPWRWLVVAVPYFWLLLFFAAPFLIIVKISLSDTAISMPPYTPVFEGFSK
LGEFFSQLDFENYLFLTEDPLYIEAYLSSLRIAFISTFLLLLIGYPMALAMARAPSSVRP
TLVMLVILPFWTSFLIRVYAWIGILKPEGLLTVLFQWLGFLGPDQQVNIFRTETAIFIGI
VYSYLPFMVLPLYSALEKLDNTLLEAAADLGCPPWKAFWKITFPLSLPGVVAGAMICFIP
ITGEFVIPDLLGGAQTLMIGKTLWTEFFGNRDWPLASAVAVLLLILLVVPIAIFQNQQKK
VG