Protein Info for Atu0610 in Agrobacterium fabrum C58

Annotation: ABC transporter, nucleotide binding/ATPase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 PF00005: ABC_tran" amino acids 39 to 181 (143 residues), 128.1 bits, see alignment E=3.9e-41 TIGR01187: polyamine ABC transporter, ATP-binding protein" amino acids 54 to 383 (330 residues), 411.5 bits, see alignment E=1.2e-127 PF08402: TOBE_2" amino acids 303 to 383 (81 residues), 65.3 bits, see alignment E=4.3e-22

Best Hits

KEGG orthology group: K11076, putrescine transport system ATP-binding protein (inferred from 100% identity to atu:Atu0610)

Predicted SEED Role

"Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2)" in subsystem Polyamine Metabolism (TC 3.A.1.11.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK50 at UniProt or InterPro

Protein Sequence (385 amino acids)

>Atu0610 ABC transporter, nucleotide binding/ATPase protein (Agrobacterium fabrum C58)
MAKTLGPVKRKFSPWDNPDAVPFIRFENVTKRFGDFVAVNNLTLDIYEREFFSLLGPSGC
GKTTLMRMLAGFEEPTEGRILLQGKDISGVPPYKRPTNMMFQSYALFPHMSVEKNVAFGL
EQDGLPKADIAARVEEMLRLVKLTEFAKRKPSQLSGGQRQRVALARSLAKRPKVLLLDEP
LGALDKKLREETQFELMDIQTNLGLTFLIVTHDQEEAMTVSDRIAVMDKGNVVQVATPAE
IYEAPNTRYVADFIGDINIFDAHVVANASDIGKPGLVTMDCDGLKVSVEQECAAAAGSQV
AYAIRPEKVRISLDQPADSSINSAYGEVWDIGYLGDFSVFIVKLADGRVIRAAQANVSRL
VDRPITFGDMVWLNWKPDSGLVLTR