Protein Info for Atu0580 in Agrobacterium fabrum C58

Annotation: flagellar biosynthetic protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 88 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 55 to 81 (27 residues), see Phobius details PF01313: Bac_export_3" amino acids 6 to 77 (72 residues), 81.6 bits, see alignment E=1.6e-27

Best Hits

Swiss-Prot: 36% identical to YSCS_YERPE: Yop proteins translocation protein S (yscS) from Yersinia pestis

KEGG orthology group: K02420, flagellar biosynthetic protein FliQ (inferred from 98% identity to agr:AGROH133_03988)

Predicted SEED Role

"Flagellar biosynthesis protein FliQ" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK63 at UniProt or InterPro

Protein Sequence (88 amino acids)

>Atu0580 flagellar biosynthetic protein (Agrobacterium fabrum C58)
MNEADALDIMQAAVWTVLVAAGPAVLAAMIVGVAIAFIQALTQVQEMTLTFVPKIVTIMI
VLGVAAPFVGAQIVLFSNLVFSRIQSGF