Protein Info for Atu0571 in Agrobacterium fabrum C58

Annotation: chemotaxis MotD protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 PF02120: Flg_hook" amino acids 304 to 379 (76 residues), 56.2 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: K10565, chemotaxis protein MotD (inferred from 100% identity to atu:Atu0571)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK70 at UniProt or InterPro

Protein Sequence (449 amino acids)

>Atu0571 chemotaxis MotD protein (Agrobacterium fabrum C58)
MIDATINAIVNAPPPDARASGANARDDAKGGSFGDALSTVRDERSPQSRHQDAGSAKEQH
AKPDDEPEKTDAPVKRPPTFLNAIARDHAGEPRNHETVAEFQNALKTVRTSADNGKTGKK
LKDETDRDAETAADTIDPKLAELKTVMIGAGDIATAKSPLEEIAQAIAGKVDSVKSDRAE
PVHGKAEPSLKDMPTKMELAKNETDTGAEGGNDASAFRFSSSRSGTARALDMGTVQREGR
VEFDVRDSSGKVADNVTVVDSRRFIGLAPSTNASALTGLIVNDPEWVSAMQPGSSLSNAA
AQSSTGKVVHTLKLHMTPIELGSVTMSLRLAGDELAVHMTVESMAAYKKLQDDSKSILEG
LKAQGLTVDNITISIASSDKSDQTGTQGNNQQNQQAQQQGQQASAGRNRDESGARDGRQG
NGDNLGVHNEGMDGALGSGRSSADNGVYL