Protein Info for Atu0558 in Agrobacterium fabrum C58

Annotation: flagellar basal body rod protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 244 TIGR03506: flagellar hook-basal body protein" amino acids 4 to 131 (128 residues), 133.2 bits, see alignment E=1.9e-42 PF00460: Flg_bb_rod" amino acids 5 to 35 (31 residues), 31.9 bits, see alignment 1.6e-11 TIGR02490: flagellar basal-body rod protein FlgF" amino acids 5 to 220 (216 residues), 192 bits, see alignment E=1e-60 PF22692: LlgE_F_G_D1" amino acids 83 to 147 (65 residues), 40.1 bits, see alignment E=4.8e-14 PF06429: Flg_bbr_C" amino acids 195 to 234 (40 residues), 44.4 bits, see alignment 1.4e-15

Best Hits

Swiss-Prot: 57% identical to FLGF_RHIME: Flagellar basal-body rod protein FlgF (flgF) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K02391, flagellar basal-body rod protein FlgF (inferred from 100% identity to atu:Atu0558)

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D183 at UniProt or InterPro

Protein Sequence (244 amino acids)

>Atu0558 flagellar basal body rod protein (Agrobacterium fabrum C58)
MQSGLYVALSSQIALERRLTTISDNMANVNTVGFRGSEVKFDEMVAKNHNDMNAKVAFVS
QGNDYLSTRQGAFEQTGNSFDFAIKGDAWFALDTPDGQILTRDGRFTMRPDGALISSSGY
PVLDAGGGPIRLNPNGGPITVGLDGAIRQNDTIAASLGIFQADFSKGFLRHPNSGVKPVA
QPVPVVNNHEVGVVQGYLEQSNVNGISQMTQLIQVNRAFESISSMMRDTESTFGEGIKTL
GGAR