Protein Info for Atu0543 in Agrobacterium fabrum C58

Annotation: flaB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 320 PF00669: Flagellin_N" amino acids 4 to 139 (136 residues), 108.9 bits, see alignment E=2.2e-35 PF00700: Flagellin_C" amino acids 235 to 319 (85 residues), 64.9 bits, see alignment E=6.9e-22

Best Hits

KEGG orthology group: K02406, flagellin (inferred from 100% identity to atu:Atu0543)

Predicted SEED Role

"Flagellin protein FlaA" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D188 at UniProt or InterPro

Protein Sequence (320 amino acids)

>Atu0543 flaB (Agrobacterium fabrum C58)
MTSIITNVAAMSALQTLRSIGQNMESTQARVSSGLRVGDASDNAAYWSIATTMRSDNMAL
SSVSDALGLGAAKVDTASAGMSSAIDVVKEIKAKLVTATEEGVDRTKVQEEIGQLQKQLA
SISQGASFYGENWLVGVSTLGAATPGTDPDKSVVAGFVRASGGAVSVTTTKYALDNTATG
NVLFGSVDGTGTPDASGILGTVGTFTTVAAQSVYTLDITQYAAADRATNMAEALTLVENS
LKAMTSAAAKLGSLSMRIGLQEDFASKLSDSVEKGIGRLVDADMNEESTRLKALQTQQQL
GVQALSIANSNSESILSLFR