Protein Info for Atu0410 in Agrobacterium fabrum C58

Annotation: transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 PF00165: HTH_AraC" amino acids 193 to 233 (41 residues), 29.5 bits, see alignment 6.4e-11 amino acids 249 to 282 (34 residues), 32.5 bits, see alignment 7.1e-12 PF12833: HTH_18" amino acids 206 to 284 (79 residues), 85.2 bits, see alignment E=3.2e-28

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0410)

Predicted SEED Role

"FIG024214: Transcriptional regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1I3 at UniProt or InterPro

Protein Sequence (287 amino acids)

>Atu0410 transcriptional regulator, AraC family (Agrobacterium fabrum C58)
MENEIEGFAVIGGPRSRVWNGIVADLWDVRCAPKAGGRYVGKDPRFVFLLDMEGTDDGRF
MMNRCRRDTCGSSRANRISFVPADIDVHAELSNVSFVRHLDLHFDAGLLGARLVQGFDPH
ALLDPHLMFEDERLLALARLIAAECDNPDPLHDLYGESLVLALLTDFLKVKREPVRKRSK
LAAWQLRAATDYIREHCLRSIRLEELAELTNLSQSHFSHAFKASTGVPPHQWQMQARIDR
VKELMMRPDMALTDIAIAAGFSDQAHFSRVFRKMVGVSPSVWQKNRQ