Protein Info for Atu0392 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 transmembrane" amino acids 29 to 54 (26 residues), see Phobius details amino acids 91 to 113 (23 residues), see Phobius details amino acids 124 to 144 (21 residues), see Phobius details amino acids 174 to 200 (27 residues), see Phobius details amino acids 220 to 244 (25 residues), see Phobius details amino acids 278 to 297 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 98 to 301 (204 residues), 44 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: K02025, multiple sugar transport system permease protein (inferred from 100% identity to atu:Atu0392)

Predicted SEED Role

"Multiple sugar ABC transporter, membrane-spanning permease protein MsmF" in subsystem Fructooligosaccharides(FOS) and Raffinose Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKB8 at UniProt or InterPro

Protein Sequence (308 amino acids)

>Atu0392 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MTVVDISTPLRAKSRLRPPKADRRMMWRGLMFAAPAGLLLLAIYIVPMFVLAGFSVTDYR
LGALSTRFIGLGNFVKAFQDPVFLRALANTALYAIIVIPFGVFLALGVALLVYNRKRSRT
FWEVAYFLPVTATLVAMATVWQFLLHPSLGPVNAAIKWLGFEPVAFLSNPVLLIPTMALM
GIWQVLGFNMVLFLAGLTAISKDLHEAARLDGAKNPVDRFLTVTWPMLGPTTMFVVVTTS
ISAFKVFETVAVLTKGRSGSETLLFDLYLEGFEYSNTGYAAALTIIFLVIVLILSIGQTL
HMDRKVHY