Protein Info for Atu0387 in Agrobacterium fabrum C58

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 transmembrane" amino acids 7 to 29 (23 residues), see Phobius details amino acids 183 to 205 (23 residues), see Phobius details PF00672: HAMP" amino acids 206 to 252 (47 residues), 43.6 bits, see alignment 4.5e-15 PF18947: HAMP_2" amino acids 309 to 361 (53 residues), 32.3 bits, see alignment 1.1e-11 PF00015: MCPsignal" amino acids 429 to 584 (156 residues), 166.3 bits, see alignment E=9.2e-53

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to atu:Atu0387)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1K2 at UniProt or InterPro

Protein Sequence (682 amino acids)

>Atu0387 methyl-accepting chemotaxis protein (Agrobacterium fabrum C58)
MRIRGRINLLVGLMSLVACTIGGLSIYAVSEFRVRTVEYEKAAERAYKGEALNRLVTAVV
MEARGVYAAADIEKAAPFADGIVKNLDAMEKLIATWTPLVPAEQKATFDNLSSRFKEFKT
FRLETARLAREAGPQAANQQGNNEANRANRKAYQAEIDAVVKNDIAELEAVKAGIDGFVT
TTFWLVITVTGSGILAGAAFGLYIGARQLSAPIRRVSEVMNAVADGNLDADVPYLGQNDE
IGEMAAAVEVFKKNGREVRRMNAQETAMRAKSDDLQAGMAVVVDAAAGGDFSRRINKDYG
DDNLNRFATTINALLIGVDNGVSETSRVIEGLARGDLTEKMDGDFRGVFAELKENVNQTL
TKLRETMREVRGSTEGISGNANELRSAADDLSKRTEQQAAALEETSAALDEITAVVRNST
DRAQEASAMVAETKQKTEESASVVRDAVSAMDRIEHASREISQIINVIDEIAFQTNLLAL
NAGVEAARAGEAGKGFAVVAQEVRELAQRSATAAKDIKALITKSGEEVGRGVSLVQRTGS
ALSEIETRVLAINEHIHSIATAAREQSTGLHEVNTAINQMDEVTQRNAAMVEETSAATHK
LSSEADHLVTLVTRFNVGTETAQRSHRIEQSLRPMTASTGPVAVSGRTAAVSSPARKLMN
SVSRALNAQPAAAPAHGDWQEF