Protein Info for Atu0318 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 37 to 55 (19 residues), see Phobius details amino acids 79 to 102 (24 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 147 to 164 (18 residues), see Phobius details amino acids 185 to 209 (25 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 125 to 258 (134 residues), 99.6 bits, see alignment E=9.7e-33

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0318)

Predicted SEED Role

"sterol desaturase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1P6 at UniProt or InterPro

Protein Sequence (304 amino acids)

>Atu0318 hypothetical protein (Agrobacterium fabrum C58)
MAKAQVIKQALSYSSWPLVFGGGLAGSYFAFAGSHPIAAFLAVYAGAVLSLFLLERYIPY
EVEWLEGDGETMTSIGHTLLTKGLVQLAAAAAAIFPMLAANVLQPLAAMRFDLWPSHLPV
IVQVALAVTIAEFGLYWAHRIAHETVFFWRFHALHHSVVRLWVVNTGRFHVADSLFKITL
SQIPLYFMGAPLQVFWWLGAVTAFIGILTHCNVDMKTGLLDYIFSTPRLHRWHHSKQLPE
GNTNYGENLVIFDILFGSYHNPDRPSSTDIGIKGEIAKGFVPQLLQPFTKEGVRQIIGKD
KKVS