Protein Info for Atu0307 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 74 to 99 (26 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 184 to 209 (26 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 89 to 275 (187 residues), 62.8 bits, see alignment E=1.9e-21

Best Hits

KEGG orthology group: K05815, sn-glycerol 3-phosphate transport system permease protein (inferred from 100% identity to atu:Atu0307)

Predicted SEED Role

"Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)" in subsystem Glycerol and Glycerol-3-phosphate Uptake and Utilization (TC 3.A.1.1.3)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1Q5 at UniProt or InterPro

Protein Sequence (280 amino acids)

>Atu0307 ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate) (Agrobacterium fabrum C58)
MYKTRPLDHLVLILGALFLILPVVVAFMTSTHTAAEIHRSGLTIVPGDNFVETYEKVLTQ
KGGFTGQVTGLNMVINSLVLGIGFAVGKIVLSMTAAYAIVYFRFRFATLAFWIIFTTLLL
PLEVRIMPSYEVMSKLGLLNSYTGLIVPLLASATGTFYFRQFFKSVPEELLEAARIDGAG
PVKFFIDILIPLSRTMMSAIFIIMFVYGWNQYLWPMLMTTDERFFTLMRGIKSILQVWVG
SQIPDYNEAFALAVLAMLPPVLIVVIFQRWFIKGLTESDK