Protein Info for Atu0167 in Agrobacterium fabrum C58

Annotation: transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 PF12625: Arabinose_bd" amino acids 28 to 207 (180 residues), 83.9 bits, see alignment E=2.5e-27 PF12833: HTH_18" amino acids 262 to 338 (77 residues), 57.1 bits, see alignment E=2.8e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0167)

Predicted SEED Role

"AraC family transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKM6 at UniProt or InterPro

Protein Sequence (346 amino acids)

>Atu0167 transcriptional regulator, AraC family (Agrobacterium fabrum C58)
MPEKRVSDEISVVAGLAAGVSNYARSRGIDIVPICKALDIDPATFSSLTERISLDRFSRL
LETCALISGDDAFGLQCAATFPAGASGAFGYGLISAPTVRSFLRFLQDHVYYATNNSNFT
MVADATQVTLSWSFAPGIAKRDQYVDLSLAVLVQRLRDILGERVNQIEIGLERQKPINIQ
LFKERLTRRVSFSQAIHTMRLPASLLDVANPNADERLFELMNLQCRMLRPETSADPTHFI
DQVKRYMQMRLSDAELSLGEIAPYFNLSERSFQRRLAELGTNLNEIKDAIRKNAGFKLLV
ESDLPVSDISYRLGYSTPGAFSRSVSRWFGATPTDIRRKHAHHSAG