Protein Info for Atu0129 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (sugar/ribonucleotide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 transmembrane" amino acids 6 to 29 (24 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 158 to 176 (19 residues), see Phobius details amino acids 206 to 225 (20 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details amino acids 257 to 275 (19 residues), see Phobius details amino acids 288 to 309 (22 residues), see Phobius details PF02653: BPD_transp_2" amino acids 14 to 298 (285 residues), 135 bits, see alignment E=1.5e-43

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to agr:AGROH133_03017)

Predicted SEED Role

"Predicted nucleoside ABC transporter, permease 2 component" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKN7 at UniProt or InterPro

Protein Sequence (323 amino acids)

>Atu0129 ABC transporter, membrane spanning protein (sugar/ribonucleotide) (Agrobacterium fabrum C58)
MDFFDMLVSILGSTVRLTIPLLFTALAGLFSERAGVFDIGLEGKMLAAAFASACVAYLTA
NPWAGLLAGIGVSILFSLIHGFAVITNRGNQIVSGVALNFIAAGLTVVLGQAWFGQGGRT
PQLPGEGRFAPIILPGADAMREVPFIGPLYANVISGNNILTYLAFLAVPLSWWVLYRTRF
GLRLRAVGENPGAVDTAGISVTWMRYRAVIVAGFLCGFSGAYLAVAQSAAFIANMSAGKG
YIALAALIFAKWKPVPVMFACLLFGFLDAFANFMQGKSVPGIGEVPVQIFQAMPYILTCI
LLAGFIGVAKPPKAGGVAYAKER