Protein Info for Atu0128 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein (sugar/ribonucleotide)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 367 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 57 to 83 (27 residues), see Phobius details amino acids 91 to 106 (16 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 204 to 224 (21 residues), see Phobius details amino acids 250 to 272 (23 residues), see Phobius details amino acids 280 to 298 (19 residues), see Phobius details amino acids 304 to 321 (18 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 60 to 346 (287 residues), 107.2 bits, see alignment E=4.3e-35

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to atu:Atu0128)

Predicted SEED Role

"Predicted nucleoside ABC transporter, permease 1 component" in subsystem D-ribose utilization or Deoxyribose and Deoxynucleoside Catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKN8 at UniProt or InterPro

Protein Sequence (367 amino acids)

>Atu0128 ABC transporter, membrane spanning protein (sugar/ribonucleotide) (Agrobacterium fabrum C58)
MSTASTPLPNWISYGLLPLLNVVTAFLISGLVVWSIGENPLAALRLLIEGALGRGDAIGF
TLFYTTSFIFTGLSVAVAFHAGLFNIGSEGQAYVGGLGAALVALALDRYVPWYVTMPFAV
IGAAVFGAAWAFIPAWLQAKRGSHVVITTIMFNFIAAALMVYLLVNVLIVPGKMAPETRT
FLPGGQLPKLDWLMAWFGLKLGPAPFNVSFLIALVMCFLVWVLIWRTKLGYEMRTLGVSP
SAAIYAGIPYSRTVIIAMLISGGLAGMMALNPVMGASARLQVEFVGGAGFVGIAVSLMGR
SHPLGIIFSALLFGILYQGGADLSFEMPNITREMIVVIQGLVILFAGALEYMYRPAIVHI
YQRLAKG