Protein Info for Atu0118 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 transmembrane" amino acids 7 to 55 (49 residues), see Phobius details amino acids 59 to 71 (13 residues), see Phobius details amino acids 108 to 132 (25 residues), see Phobius details amino acids 142 to 162 (21 residues), see Phobius details amino acids 169 to 188 (20 residues), see Phobius details amino acids 202 to 220 (19 residues), see Phobius details amino acids 256 to 279 (24 residues), see Phobius details amino acids 318 to 342 (25 residues), see Phobius details amino acids 354 to 380 (27 residues), see Phobius details amino acids 386 to 405 (20 residues), see Phobius details amino acids 411 to 429 (19 residues), see Phobius details amino acids 467 to 487 (21 residues), see Phobius details PF01970: TctA" amino acids 20 to 438 (419 residues), 529.7 bits, see alignment E=2.3e-163

Best Hits

Swiss-Prot: 70% identical to YZ2R_AGRVI: Uncharacterized 52.8 kDa protein in TAR-I ttuC' 3'region from Agrobacterium vitis

KEGG orthology group: None (inferred from 100% identity to atu:Atu0118)

Predicted SEED Role

"Tricarboxylate transport membrane protein TctA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKP2 at UniProt or InterPro

Protein Sequence (501 amino acids)

>Atu0118 hypothetical protein (Agrobacterium fabrum C58)
MDLLNNLALGFVTASSLANLFFCLIGVLLGTLIGVLPGIGATATIAMLLPITFQLEPVSS
LIMLAGIYYGAQYGGSTTAILINMPGESSSAVTAIDGYQMARKGKAGAALAIAAIGSFFA
GTVSTFLVAIFAPPLTAIALEFGAAEYFSLMVVGLVSSIALAHGSIVKALAMVVLGLLLG
LVGTDIYSGTPRFTLGIREYADGLNFVAVAVGVFGIAEILRNLENERTRSVLIAKVSSLM
PSKEDFKAMIGPVLRGTAIGSALGILPGGGAILAAFASYTVEKRVSKNPEEFGHGAVAGV
AGPESANNAGAQTSFIPLLTLGIPANPVMALMIGAMIIQGIVPGPNVATEQPALFWGIIA
SMWIGNLMLVILNLPLIGLWVKLLTVPYYVLFPIIMAFCAIGVYSVNSNVFDLYAVAFFG
FIGYVLVKLRCEPAPLLLGFVLGPLLEENLRRAMILSRGDPTTFVTRPISATLLFIALAV
LIIVFLPSVKKKREEVFVEED