Protein Info for Atu0092 in Agrobacterium fabrum C58

Annotation: lytic murein transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR02283: lytic murein transglycosylase" amino acids 39 to 348 (310 residues), 364.9 bits, see alignment E=1.5e-113 PF13406: SLT_2" amino acids 40 to 344 (305 residues), 340.8 bits, see alignment E=6.6e-106 PF01471: PG_binding_1" amino acids 366 to 420 (55 residues), 34.7 bits, see alignment 1.6e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0092)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)" in subsystem Peptidoglycan Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKQ3 at UniProt or InterPro

Protein Sequence (421 amino acids)

>Atu0092 lytic murein transglycosylase (Agrobacterium fabrum C58)
MPHRFATKALAAILSVFSATTVLAQSAPKGAAAAKYDADFNAWLKKEIWPEARKAGISQE
TLEATLSGLSISWNLPDLVIPGQKPPKEQSQSQAEFSSPGAYFSEKRLQGLAVTGRSLAA
THAATLRRIETKYGVPGDIVVAIWGRESGFGRAKLPHSVVDVLATKAYMSTRKEMFRTEL
IDALKIVESGDIAASRMMGSWAGALGQPQFMPSSYLKYAVDFDGDGHRDIWNSVPDALAS
IANYLSQRGWQRNRDWGFEVSIPANVSCAQEGPDLARPVADWAKMGITRISGKAFPVNDL
TADGMMLVPAGRHGPEFVVTPNFYVIKEYNNSDLYALFIGNLADRIAHGAGPFKGEWGNV
GSMLRSDVLTMQKALVAKGYDVGKADGLAGFKTRRSLGDWQSKNGLAPTCFPDATLKAKL
K