Protein Info for Atu0091 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 44 to 62 (19 residues), see Phobius details amino acids 69 to 87 (19 residues), see Phobius details amino acids 123 to 152 (30 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 250 to 268 (19 residues), see Phobius details amino acids 274 to 297 (24 residues), see Phobius details amino acids 309 to 329 (21 residues), see Phobius details amino acids 335 to 358 (24 residues), see Phobius details PF07690: MFS_1" amino acids 1 to 324 (324 residues), 120.5 bits, see alignment E=8.1e-39 PF05977: MFS_3" amino acids 1 to 486 (486 residues), 670.4 bits, see alignment E=1.7e-205

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0091)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKQ4 at UniProt or InterPro

Protein Sequence (503 amino acids)

>Atu0091 MFS permease (Agrobacterium fabrum C58)
MMTSLSSSENMIALVQASTSLPIMMFSLISGALADSFDRRRIMISAQLLMLTASVLLTVF
AWSGWLTPWLLLFFTFMIGCGTALNNPSWQASVGEMVPREDLPAAVTLNSVGFNITRSVG
PAIGGIIVAAAGAAAAFFVNALSYFTLIYALFRWQPPKYASTLPREQLLAAISAGMRYVA
MSPNIGKVLVRGFLFGLSASAILALMPIVARDLVEGGPLTYGVMLGAFGVGAIGGALVSA
RLREVMSSEWIVRVAFLGFAFSSGVTAVSTSSIITSLVLAIAGACWVLALSLFNTIVQLS
TPRWVVGRALSLYQTLTFGGIAVGSWLWGELAEDYGISYSLLCSCVLMLLGVVVGLKLAM
PAFASLNLDPLNRFVEPPLRLDVKPRSGPIAILIDYEIHDEDLGEFLPLMAERRRIRLRD
GARNWNLMRDLENPDIWTESYHVPTWVEYVRHNHRRTQADAEAWDRLLELHRGKTRPRVH
RMIERQTIPPTDDIFHKPHTDQH