Protein Info for Atu0086 in Agrobacterium fabrum C58

Annotation: ribosome-binding factor A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 138 TIGR00082: ribosome-binding factor A" amino acids 11 to 120 (110 residues), 52.9 bits, see alignment E=2.5e-18 PF02033: RBFA" amino acids 12 to 118 (107 residues), 92 bits, see alignment E=1.4e-30

Best Hits

Swiss-Prot: 100% identical to RBFA_AGRFC: Ribosome-binding factor A (rbfA) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02834, ribosome-binding factor A (inferred from 99% identity to agr:AGROH133_02925)

Predicted SEED Role

"Ribosome-binding factor A" in subsystem NusA-TFII Cluster

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UJ52 at UniProt or InterPro

Protein Sequence (138 amino acids)

>Atu0086 ribosome-binding factor A (Agrobacterium fabrum C58)
MAKATSSAPSQRMLRVGEQVRAALTQILQRGEVRDDLIEGTVISISEVRMSPDLKIATAY
VTPLGVADHTDIISALNRHAKFMRGRLGPQLRQMKYMPELRFRDDTSFDNYQKIDALLRS
PEVQRDLGPSNEKDDEQN