Protein Info for Atu0072 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 44 to 64 (21 residues), see Phobius details PF05990: DUF900" amino acids 147 to 374 (228 residues), 298.6 bits, see alignment E=4.7e-93 PF12697: Abhydrolase_6" amino acids 166 to 300 (135 residues), 39.8 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0072)

Predicted SEED Role

"FIG00364228: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKR2 at UniProt or InterPro

Protein Sequence (411 amino acids)

>Atu0072 hypothetical protein (Agrobacterium fabrum C58)
MARWRMPDPIDQHQNHANYSVVATFLAGSYLWTFIVTGNPSMRLIISLVLMISLLSSCAG
RPGADVLQAVNTRAKDAKIVTAYVASTREKSEEAKKGFSALRAAEPNYARFDISIPPTHK
SGKIEWSTGKPDAKKDFVVTKAQMLSKTSFTTDLGDISRSGKQIALFVHGYNYSYQEALF
RAAQMAADANMDGVPLVFSWPSQANLTGYVADKESATYSRDALATLLTDLTRQTPRKSIV
VFGHSMGGWLVMEALRQLRFEGRNDVIAKLQVVLAAPDIDADVFRKQIEVVGRLNPPLTV
LVSKDDRALKASSILGADVTRIGALDVADPQVQEAALKEGVQFVDISNLKASDPLNHDRY
AALASLVPQLEASRNGNGQNGIGRAGAFVFDAIGATVSSPFRLASQVVNPQ