Protein Info for Atu0046 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 321 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07182: DUF1402" amino acids 19 to 321 (303 residues), 562.9 bits, see alignment E=7.8e-174

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0046)

Predicted SEED Role

"Mll5001 protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKS2 at UniProt or InterPro

Protein Sequence (321 amino acids)

>Atu0046 hypothetical protein (Agrobacterium fabrum C58)
MRKILLAFVVALAVSAVSSSYAEAATVVPPGNRNAEQPGVPGASARRTKASNSSFERKYQ
KVIDLLSSDKALIAKIKSTAGRYGIDPIHMVGAIVGEHTYNVDAYDRLQSYYVKAASYAG
SSFRFGYKDETIAQFLTHAQFSKCQAKKDSYSLWNCREDVWDDSFRGKTVDGVAYPNNRF
SAVFFQPFYAGQTFGLGQINPLTALMLSDMVSRTSGYEKLDENDATAVYTAIMDPDRSLA
FMAASIRKSIDDYRSIADMDISKNPGVTSTLYNVGGSQQRAAALAQKNRQRAGGGEQPLL
PEENYYGWLVNDRIKDLQALL