Protein Info for AMB_RS24520 in Magnetospirillum magneticum AMB-1

Annotation: phosphodiesterase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 605 TIGR00229: PAS domain S-box protein" amino acids 52 to 175 (124 residues), 64.9 bits, see alignment E=7.5e-22 PF00989: PAS" amino acids 55 to 161 (107 residues), 42.5 bits, see alignment E=1.5e-14 PF13426: PAS_9" amino acids 64 to 166 (103 residues), 50.1 bits, see alignment E=7.1e-17 PF08447: PAS_3" amino acids 78 to 160 (83 residues), 27.6 bits, see alignment E=7.2e-10 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 180 to 334 (155 residues), 73 bits, see alignment E=2.4e-24 PF00990: GGDEF" amino acids 180 to 333 (154 residues), 98.2 bits, see alignment E=1.1e-31 PF00563: EAL" amino acids 358 to 592 (235 residues), 228.4 bits, see alignment E=2.1e-71

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (605 amino acids)

>AMB_RS24520 phosphodiesterase (Magnetospirillum magneticum AMB-1)
MVRRLRDIEAVINDFLSGNILVRCESSSDEVIGPVSLAINRLLEETAHRQSSLLRLSAAV
EQAPVSVVITDCGGLIQYVNPCFTKNTGYTYEEAVGLNPRILKSGYTPDEVYHELWGAIS
DGKVWHGELHNKKKNGELFWEYAVIAPVIDDCAQIVNFIAIKEDISIRKEFEKRLIHTQN
FDELTGLPNRAVALDRLGQAISANSSFGRIVSALIVKVDGLSRANHIHGHKGGDLILKQA
AERISEIVLNDLNTVSRIGGTEFLVILQGISTPSIAESVAKRLIEVLSQPFNIWGEQIFL
SSSIGMSFSPIDGTDHFELLRNAHSALMNARNKSCSGYRLFMPEMDRDARERQSLDSELH
SAVTEDLIKVFYQPLIDAKSGRIVGAEALARWQTHGGRYISPDKFIPLAEENGLIKQIGS
SILFSACKDAAFWRSNYGAAFRVAVNISALQCNDMGFIETIEKILEETGFPPELLEIELT
ERTLVADSHAAIAFMEVARGMGIRLSIDDFGTGYSALGYLRKFPFTTLKIDKSFTSEISD
KGKGNALISSIIQMAHALDLEVIAEGVENGFQREFLIDCGCEILQGFLLGHPVPADQFLL
NMELI