Protein Info for AMB_RS24375 in Magnetospirillum magneticum AMB-1

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 PF13690: CheX" amino acids 49 to 147 (99 residues), 52.5 bits, see alignment E=4.3e-18 PF00072: Response_reg" amino acids 187 to 297 (111 residues), 99.3 bits, see alignment E=1.5e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1946)

Predicted SEED Role

"Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W5X5 at UniProt or InterPro

Protein Sequence (303 amino acids)

>AMB_RS24375 response regulator (Magnetospirillum magneticum AMB-1)
MTFDMLKFPPTMAAVLTRTRDYFQEEIGLKVSRAKPRTGNVDALQLRDVTAVVCTDGPVK
LLIAFSFQRVLLEHLREVMTADLNVLPSERELFLRETAGETVNFILGHATADLAEGGNVI
RLSPPSVLDEEKNILRPKKAIFTTIEMTTSHGTLDINFIGPSELFDRRLNFINEEEVQGG
NMHPLKVLIVDDSLLTVRTLTGMLMELGHLVVQTAGSGALALEAYRQAKPDLVTMDITMP
DMDGIEATTGILKEFPDANIIMVTSHGQQGMVMKAVKAGAKGYVLKPIKADKLREMIARV
FKA