Protein Info for AMB_RS23555 in Magnetospirillum magneticum AMB-1

Annotation: HD domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 transmembrane" amino acids 219 to 242 (24 residues), see Phobius details PF13487: HD_5" amino acids 280 to 445 (166 residues), 142.9 bits, see alignment E=8.6e-46 TIGR00277: HDIG domain" amino acids 292 to 382 (91 residues), 28.4 bits, see alignment E=5.8e-11 PF01966: HD" amino acids 293 to 413 (121 residues), 72.4 bits, see alignment E=3.8e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3440)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W1N1 at UniProt or InterPro

Protein Sequence (467 amino acids)

>AMB_RS23555 HD domain-containing protein (Magnetospirillum magneticum AMB-1)
MGDMARQVTSRSVIRDALSSYNQGAMSLDKLQAFTADKLGDSMKLSRDMLGILRVGRDYR
PLVSVGASVPPALWSPEAGEPPALGAPTLIDGRWVLLVSAPILGRDGTREGHDLLLFDAQ
GLRAIVADVETLGRTGEIILGRLAASGAQVFFPRRDGSAGGDDEVAEAFSRAAIDPEPLY
LTRPGAVPDVVLSQRLPGSDWIVMVRQDLAELHSNIDQLVLSVAAGALVLVGFGMVGFVL
ILRPLTGRMLVHTGDLKRQIKDGERAQAALERALEGTIEAVASTIEVRDPYTAGHQRRVA
EIAVAIGRQLGLPAETLKGLRVAGTIHDIGKIGIPAEMLTRPGRLSALEFDIIRNHSADG
CEILNGVDFPWPIADMVRHHHERMDGSGYPDGLKGDEILFEARILAVADVVEAIASDRPY
RAALGLDAAMREIIAHSGTLFDAAVVDACRVLAAEGRLPLGDRPSLQ