Protein Info for AMB_RS23505 in Magnetospirillum magneticum AMB-1

Annotation: DNA-directed RNA polymerase subunit beta'

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1496 PF04997: RNA_pol_Rpb1_1" amino acids 15 to 343 (329 residues), 295.1 bits, see alignment E=2.1e-91 PF00623: RNA_pol_Rpb1_2" amino acids 345 to 391 (47 residues), 33.4 bits, see alignment (E = 1.6e-11) amino acids 392 to 486 (95 residues), 96.6 bits, see alignment 6.2e-31 PF04983: RNA_pol_Rpb1_3" amino acids 490 to 527 (38 residues), 40.4 bits, see alignment (E = 9e-14) amino acids 625 to 747 (123 residues), 49.4 bits, see alignment E=1.5e-16 PF05000: RNA_pol_Rpb1_4" amino acids 776 to 857 (82 residues), 71.4 bits, see alignment 1.7e-23 PF04998: RNA_pol_Rpb1_5" amino acids 860 to 1406 (547 residues), 252 bits, see alignment E=2.2e-78

Best Hits

Predicted SEED Role

"DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6)" in subsystem RNA polymerase bacterial (EC 2.7.7.6)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.6

Use Curated BLAST to search for 2.7.7.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2I2 at UniProt or InterPro

Protein Sequence (1496 amino acids)

>AMB_RS23505 DNA-directed RNA polymerase subunit beta' (Magnetospirillum magneticum AMB-1)
MNELMKIFGQVSGTQSFDQIRISIASPERIRSWSYGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLCDMTLKDLERILYFENYVVVEPGLTPLKIRELLTEEQYMRAVDEYGEDAFTAK
IGAEAIRDMLTVIDLETEKAQLKVDLKETTSEAKRKKLVKRMKLVEAFMESGSRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML
QEAVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELKLHQCGLPKKMALELFKPFVYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGIYYITMERDEVPGQVLKIRSMDELKGAIAN
NAILFYCPTDPNTKIDTKDLDTLLDRLASRNVTAHRRVNPSSKDALEAGLKGGHLRLFNV
EKPGVPLVFADVNDAEKAIKDGKAILFKVPVFVNMAEIEEALTEKTITLHTKIRARFDTV
DSEGTPVTQIVDTTPGRMMLSVILPKNKNVPFSLINRLLTKKEIQNVIDVVYRHCGQKET
VIFADRVMGLGYSNAFKAGISFGKDDLVIPPEKETLVGETEEKAKEYEQQYQDGLITQGE
KYNKVVDAWSKCTDDVADAMMKQISSLVPGKQINSIYMMAHSGARGSAAQMKQLAGMRGL
MAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD
AIICEEDCGTTNGLTVSPVIEGGEVIASLAERILGRSAARDIVNPLTGEVIVKAAQMIQE
TEVELIDAAGIETVVIRSVLTCDSEEGVCGSCYGRDLARGTRVNVGEAVGVIAAQSIGEP
GTQLTMRTFHIGGAAQRGAEQSSIEATFDGTVQVINRNVVVNSSGASIVMSRNCEVALLD
INNRERARHRVPYGAKLLVDEAQKVTKGTKLAEWDPYTLPIITERAGVAHYVDLTEGLSM
REVVDEATGIASKVVVDWKQQPRGADLRPRVTLRDEKGEELLLANGLEARYFMSVDAILS
VENNTKVNAGDVLARIPRESSKTRDITGGLPRVAELFEARKPKDHAIISDCDGRVEFGKD
YKSKRRILVVPEEGDAIEYLIPKGKHISVQEGDYVRRGDPLMDGNPVPHDILKVLGVEAL
AQYLINEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDPGDTTLLVGEQVDRVEFDIEN
SKAIREQGRPASGTPVLQGITKASLQTHSFISAASFQETTRVLTEAAVSGKVDSLQGLKE
NVIVGRLIPAGTGAVMNRLRAIAAKRDKDMQVEGESEVPAIPPVAEGSAPEAPPAE