Protein Info for AMB_RS23280 in Magnetospirillum magneticum AMB-1

Annotation: glycosyltransferase family 1 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 445 PF13439: Glyco_transf_4" amino acids 95 to 249 (155 residues), 61.3 bits, see alignment E=2.5e-20 PF00534: Glycos_transf_1" amino acids 258 to 418 (161 residues), 73.8 bits, see alignment E=2.6e-24 PF13692: Glyco_trans_1_4" amino acids 273 to 407 (135 residues), 70.1 bits, see alignment E=5e-23 PF13524: Glyco_trans_1_2" amino acids 345 to 436 (92 residues), 29.6 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1438)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W7D3 at UniProt or InterPro

Protein Sequence (445 amino acids)

>AMB_RS23280 glycosyltransferase family 1 protein (Magnetospirillum magneticum AMB-1)
MPVPVAGGACSRADRRYPPLGGKSRRRARRIGLRAVVPARRRAGRHHRLGQGPGGGRPVI
VGLAGPCNPRALAHHLHPEDAARSWPCGNGLPVEGLADALIRHGHRVVIYTLDEQCREPL
RLSGPSLAIHIGPYRPRHRMRDGFAAERRALVAMMRAEPPEILNAHWSYEHALAAMEADV
APVVVTIHDWAPAVLRSQFTPYRMGRLVMHAVAMAKCSRLVAVSPYVAAKTKAWFRRSCQ
VIANGIVTEATAPRPRSFPPGPPVLVAANQGFSRFKNISRLLQDFPLVREVFPEARLRLL
GYGFEPGGAAEQWAAARELCDGIDFVGQIPAPEVLKEFAAAHMMVHPSLVEACPMVMIEA
MGQGTPVVGAAEASASAWMLGQGANGVLAQARRPGSIAQACIALLSDPKTWERTGRAGWD
AVRTRFTMDRVVEEYLALYRSVLAS