Protein Info for AMB_RS23245 in Magnetospirillum magneticum AMB-1

Annotation: Ni,Fe-hydrogenase maturation factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 TIGR00072: hydrogenase maturation protease" amino acids 7 to 120 (114 residues), 59.9 bits, see alignment E=1.4e-20 PF01750: HycI" amino acids 26 to 121 (96 residues), 29.7 bits, see alignment E=2.6e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1113)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8A8 at UniProt or InterPro

Protein Sequence (142 amino acids)

>AMB_RS23245 Ni,Fe-hydrogenase maturation factor (Magnetospirillum magneticum AMB-1)
MGRPRRIICVGNRHRPDDDLGPRVHDLLAGAALPQGVELVDGGLCGLDLLLTVETAGRAV
FVDTVAGFGLPGQVVMLSRHEVAALAEGSWGHDSGLPYLFHLLPRVCDGAVPEVILVGGE
APAGDMLVAALAARAVEEASKP