Protein Info for AMB_RS23215 in Magnetospirillum magneticum AMB-1

Annotation: glycosyltransferase family 1 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 577 transmembrane" amino acids 133 to 150 (18 residues), see Phobius details PF00534: Glycos_transf_1" amino acids 226 to 378 (153 residues), 85.4 bits, see alignment E=6.8e-28 PF13692: Glyco_trans_1_4" amino acids 235 to 363 (129 residues), 66 bits, see alignment E=9.3e-22 PF20706: GT4-conflict" amino acids 236 to 343 (108 residues), 27.1 bits, see alignment E=4.2e-10 PF13524: Glyco_trans_1_2" amino acids 315 to 382 (68 residues), 30.9 bits, see alignment E=5.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1083)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8D8 at UniProt or InterPro

Protein Sequence (577 amino acids)

>AMB_RS23215 glycosyltransferase family 1 protein (Magnetospirillum magneticum AMB-1)
MRRRPPRLPCRPKMDCDCDMTADGLREQLIQAPVQVIVDFVPVMPGGENGEAQQVALGLL
EGLMALQPQWTFHVLVNSLALDYVGEFAPAANVICVRDSGGPVHIELPELPGRQVGHVVL
CPFSGPTYHSRALPLVSVIHDLLFALYPQYFLPEEESERRRNLRYTREFSDLAVCVSDHV
RQTVIEAAEFPAERVRTIRTRLAPRLAPVRSTAILDHLGLRAQGYLVYPADTGLHKNHEM
LLTALGIYRCRHPKSDLVLVCCGVGDNARAKEVKAAAVSMGLSVLFLGHLNGEDLSALIS
NSLALIFPSLVEEYGTALREAMALGAPVLCSNGAGLSEIVGDASLAFDARNPNEIAAAIE
RCEQDPALREELRQKGLEWVGAAGSLADAVRGYRDVMVDAMIGRGVTVDRLPRICAPEWR
VGTVLDLTLPDSRSFLLAGWWSTEGHGIWLKDECSEIRFEADDTREALVLTMEITPFMVH
GLPTAYPLGIVLNDRPLATLTVGMPGRIVVPVPAEVWNAARIKTLCLRPRGGRTPASLGV
NADTRRLSVAIRTLAFLHERASGVSAVPGDPGASPPA