Protein Info for AMB_RS23195 in Magnetospirillum magneticum AMB-1

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 427 PF00005: ABC_tran" amino acids 53 to 185 (133 residues), 72.8 bits, see alignment E=4.4e-24 PF14524: Wzt_C" amino acids 288 to 417 (130 residues), 75.1 bits, see alignment E=6e-25

Best Hits

KEGG orthology group: K09691, lipopolysaccharide transport system ATP-binding protein (inferred from 100% identity to mag:amb1062)

Predicted SEED Role

"ABC transporter ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8F9 at UniProt or InterPro

Protein Sequence (427 amino acids)

>AMB_RS23195 ABC transporter ATP-binding protein (Magnetospirillum magneticum AMB-1)
MSAADRPSAHREAVSLSVRNLSKFFKIYRNSGDRLKEWFRLGRSPRHEKFWALQDVSLTL
RQGECLGIVGVNGSGKSTLLKILAGTMEASAGDVEVNGRCYALLELGTGFNPDVSGRDNI
TLAASMLGVKPEWVAKRVDDIIEFSGLGEFIDRPLRTYSSGMMVRLGFSIFAFIDPDILI
IDEALSVGDVAFQLKCIRRMEDLIYQDQRSAIIISHDTNALERFCDRVIWLDQGRVRMEG
EPSEVVNAYIMANSTGALSEHEQAISVPAQTPPGVRLPVSDAAALFLSDQAEIVQLWAED
KAGGWIVSASSDQEFTLCYQARLHVELTGPVFGIRMVNGRGDVVVSTNTFLEGLDDATFH
PGDEVMLRWPIRAGLMPGHYFVSCGISKREDPHDFLVRHLDAYHFTIQGEARGSGFVTIS
GKPVISR