Protein Info for AMB_RS22985 in Magnetospirillum magneticum AMB-1

Annotation: Tim44 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 219 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details PF04280: Tim44" amino acids 71 to 215 (145 residues), 170.8 bits, see alignment E=1.1e-54

Best Hits

KEGG orthology group: None (inferred from 56% identity to rru:Rru_A3608)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (219 amino acids)

>AMB_RS22985 Tim44 domain-containing protein (Magnetospirillum magneticum AMB-1)
MNDGYHFLDIVFFAMVAAFLVLRLRSVLGKRTGAERPPEQWTPPEAAADNVVDLQSVRRS
ASEPPAETPMGQGLAAIRAADRGFDLDGFLGGAKAAFEMIVIAFAHGDKATLQPLLAPDV
YRHFSDAIDARRQHGETLQTELVGIRTAELVEAGMDGRFAALTIRFVSEQVNALRDAKGE
VVEGNPERVIDVIDLWTFRRDTRSADPNWALAATHTPEP