Protein Info for AMB_RS22785 in Magnetospirillum magneticum AMB-1

Annotation: YraN family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 PF02021: UPF0102" amino acids 20 to 113 (94 residues), 67.5 bits, see alignment E=5.5e-23

Best Hits

Swiss-Prot: 100% identical to Y4503_MAGSA: UPF0102 protein amb4503 (amb4503) from Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)

KEGG orthology group: K07460, putative endonuclease (inferred from 100% identity to mag:amb4503)

Predicted SEED Role

"Predicted endonuclease distantly related to archaeal Holliday junction resolvase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VYL8 at UniProt or InterPro

Protein Sequence (129 amino acids)

>AMB_RS22785 YraN family protein (Magnetospirillum magneticum AMB-1)
MNSAPPSRAHQAAQRRGKVAEGLAALWLRLKGYGILAKGLKSGRGSGAGEVDLVARRGDL
VAFVEVKSRATLDQAIESLTPFQRQRIERAAAAFLARRPELASCGVRFDMVLVAPWRLPR
HIPDAWRID