Protein Info for AMB_RS22730 in Magnetospirillum magneticum AMB-1

Annotation: DUF4175 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 771 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 47 to 67 (21 residues), see Phobius details amino acids 139 to 156 (18 residues), see Phobius details PF13779: DUF4175" amino acids 4 to 771 (768 residues), 733.1 bits, see alignment E=2.1e-224

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4492)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VYM9 at UniProt or InterPro

Protein Sequence (771 amino acids)

>AMB_RS22730 DUF4175 domain-containing protein (Magnetospirillum magneticum AMB-1)
MPTLSRKLRLARLALLWERAWPPLAAALSLLALFLALALFDVAPLLPFWLHAALTPAFAL
AIAVLVGKACRTEPPSADEAARRLERDSHVAHRPLAALADDLATGDPVLWQAHRDRMARD
AQHLRPGWPDPVLPARDPLGLRFAALLLLILAMAGGRSDMGGRLARAVDPYSLRPALESD
TLEVWIVPPAYTGLGQTLLKPGQGAVTVPAGSMARAVTSWRGWSGSALSAGGSAAVFGEN
GRAELALTAGPSLDVRLGLRMAASWPITLRADQPPSIAVTQPPKGDERGRLTLEMEAGDD
YGLTRAWVEVRPLEEGAEPLRLDLVLPGERLHQARLMLRADLADHDWAGTKVRLTPKAED
GAGQKGEAPPVEIVLPERIFRNPLARALVQWRRQLSDAPRMGPEIAEELRQIMEQPEAFG
GDDRVFLALSVSRHMLMRPEFERDRMRSLLWYAATRLEDGGLPAAEKSLEDARSSLERAL
ADKADAAELSRLVDQLEAALEQWMEALAELGLDQSLPPEGSAPAADLSDMLDQLRGMAET
GDREGLRRRLEQLSRLMAEMGTPQKGQGGDPAAAEAMRRLRELTQRQQDLLDRSFRKAPP
EDQVAPDEDTPKPRRKPSPREAAEARKEAAEQKALRQALEQLGKSMPQPPDSLAEAERSM
RGAESSLSEGEWAEAADQQSEAVKRLQEGARQMIERMEAARGKGAPALLPRDPFGRTLNG
STFADDGRTKVPGRSDTMRAREILQELRRRSGQPHRPEPERDYLKRLLKPF