Protein Info for AMB_RS22665 in Magnetospirillum magneticum AMB-1

Annotation: lipopolysaccharide heptosyltransferase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 373 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 289 to 310 (22 residues), see Phobius details PF01075: Glyco_transf_9" amino acids 169 to 301 (133 residues), 24.3 bits, see alignment E=9.5e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4479)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VYP2 at UniProt or InterPro

Protein Sequence (373 amino acids)

>AMB_RS22665 lipopolysaccharide heptosyltransferase family protein (Magnetospirillum magneticum AMB-1)
MKIAALLDPVLRFLLRYRKRKKRAEGVLLVSSRGPAEMVFLSAVLPRFMRLAKLDESVTL
LCRADAAGMSFLFPRTLKLRRIDFRRLDELEYRWNSFKELFSQHYRLIVSLDYVREHDQD
EALIITADPAETAGMVPPPFKRNFHQRLEESERVFDLLFDSGPVRQDKIVRWSRFADEVL
DDRQPPVLALLEDSQLPNAEALSAPTIVLLPFSGVKQRMLPAETWRLLADLVPPNWQVLV
AGHKNDFDKNPDYMSLLTQPNVRMETSGFEKLASTLLGSKLVIGVDTAGLHLAVLLGVPT
LCMASAAYVGAGVPYDDRVVPGNVQFVYVPMECQGCLGRCKFPLEDGMYKCVNAIDTDQV
LAFVRDSVARGVF