Protein Info for AMB_RS22505 in Magnetospirillum magneticum AMB-1
Annotation: RNA-binding S4 domain-containing protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K04762, ribosome-associated heat shock protein Hsp15 (inferred from 100% identity to mag:amb4447)Predicted SEED Role
"Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)" in subsystem Heat shock dnaK gene cluster extended
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2VYS4 at UniProt or InterPro
Protein Sequence (93 amino acids)
>AMB_RS22505 RNA-binding S4 domain-containing protein (Magnetospirillum magneticum AMB-1) METSIRLDKWLFFCRFFKSRSLAANVVESGGVRLNGLPVAKPAHAVKPGDRVSFPAGPYL RTVEVVALGTRRGPALEAQGLYRDLGKERAPEE