Protein Info for AMB_RS22455 in Magnetospirillum magneticum AMB-1
Annotation: uracil-DNA glycosylase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K02334, DNA polymerase bacteriophage-type [EC: 2.7.7.7] (inferred from 100% identity to mag:amb4438)Predicted SEED Role
"Uracil-DNA glycosylase, family 4"
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.7.7.7
Use Curated BLAST to search for 2.7.7.7
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See Q2VYT3 at UniProt or InterPro
Protein Sequence (279 amino acids)
>AMB_RS22455 uracil-DNA glycosylase (Magnetospirillum magneticum AMB-1) MTAISADLNPYDILRWYLESGVDETMGEEPLDRYATTRRALESRAAAVPPPAPQAQRQPR PHAEPMAAPPGALSASALPGTAAHLAAGCADLQALRHAMEGFEGLQLKQAASSTVFGDGN PESAVMCIGEAPGQEEDRRGLPFVGPSGKLLDRMLGSIGLDRSTCYITNVVPWRPPANRK PTPDEVAVCMPFLTRHIELVDPQVLILLGGASAAAVLAKADGINRLRGRWFEFNSPGLPR PIPALATFHPAYLLRTPEAKRDAWRDLLMIRRRMDAVRH