Protein Info for AMB_RS22325 in Magnetospirillum magneticum AMB-1

Annotation: 4Fe-4S binding domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 27 to 47 (21 residues), see Phobius details amino acids 61 to 83 (23 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 141 to 160 (20 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 259 to 279 (21 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details amino acids 329 to 352 (24 residues), see Phobius details amino acids 364 to 384 (21 residues), see Phobius details amino acids 401 to 418 (18 residues), see Phobius details amino acids 430 to 453 (24 residues), see Phobius details PF12801: Fer4_5" amino acids 66 to 103 (38 residues), 37.5 bits, see alignment 9.1e-14 amino acids 151 to 184 (34 residues), 18.7 bits, see alignment 7e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4413)

Predicted SEED Role

"Ferredoxin" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VYV8 at UniProt or InterPro

Protein Sequence (454 amino acids)

>AMB_RS22325 4Fe-4S binding domain-containing protein (Magnetospirillum magneticum AMB-1)
MTAISFRSTPLAVLGHFLARQSRMIQAVQWLMVVVYLALVTLPAFLPVPDDSKHIWDNLV
LFAQFAFWGVWWPFVMVSMLVMGRAWCGLFCPEGTMTEWISRHGLGRAIPAWLRWKGWPF
VAFVCTTVYGQMITVYEYPKAALLILGASTVMALGIGLVYGRGKRVWCRYLCPASGVFSL
LSRLAPVHFAVDAESWKTAPRTHAVNCATLVDVRAMTGGGSCHMCGRCSGHRGAVELQPR
LPGAEIAALPAREVSPWDIILLLFGVMGVASGAFQWSASPYFIALKQGLAKILVEHSILF
PMTETLPWWLLTNSDETGEVFTLLDGFCILTYMGGAALLFGTIGLAGLAAAARMLGQRQL
LWRLGYGLVPAGAVGLIVGLSAMTLTQLTAEGVFLAWVPDARAGLLLLGLGWSAALLWRS
LPAAALWRRAAAWSLGMAGAFAQLGMWGVFFFVW