Protein Info for AMB_RS22280 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 225 to 246 (22 residues), see Phobius details PF09608: Alph_Pro_TM" amino acids 23 to 248 (226 residues), 273 bits, see alignment E=1.1e-85

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4405)

Predicted SEED Role

"putative transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VYW6 at UniProt or InterPro

Protein Sequence (249 amino acids)

>AMB_RS22280 hypothetical protein (Magnetospirillum magneticum AMB-1)
MKRLLLLLVLLIPAPSAWAVEPLVADLSKHLVAITTGFAGTDVLLFGAIEEMDGGKAGDV
VVVVRGPNKAETLRRKDRTAGIWINSGIAKVDNAPSFYQVASTRPLDQLASPAILDRHQI
GLEHLDLDIRVKDAGSNLEQYRQALFRLNQKKGLYGDKVLDIGMLSQRLFRTDVHFPANV
PVGVYMVEVYLMSGGQVVSAQTTPLVVSKIGIGADVFDFAHHQAAAYGLIAIALAALAGW
LAAVVFKKA