Protein Info for AMB_RS22140 in Magnetospirillum magneticum AMB-1

Annotation: YggT family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 75 to 95 (21 residues), see Phobius details PF02325: YGGT" amino acids 14 to 91 (78 residues), 73.1 bits, see alignment E=9.9e-25

Best Hits

Swiss-Prot: 47% identical to YR5A_AGRFC: Uncharacterized protein Atu2659.1 (Atu2659.1) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02221, YggT family protein (inferred from 100% identity to mag:amb4376)

Predicted SEED Role

"Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock)" in subsystem Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VYZ5 at UniProt or InterPro

Protein Sequence (101 amino acids)

>AMB_RS22140 YggT family protein (Magnetospirillum magneticum AMB-1)
MDFILEPLIRVILIALDLYMYIVIASVIASWLVAFGVINTYNSTVRTILDVIYRLTEPAL
RPIRRMMPDLGSVDLSPIVLWLIILFVEMLLGKALRLVMMS