Protein Info for AMB_RS22000 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 20 to 40 (21 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details amino acids 78 to 99 (22 residues), see Phobius details amino acids 105 to 122 (18 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 217 to 241 (25 residues), see Phobius details amino acids 253 to 271 (19 residues), see Phobius details amino acids 283 to 302 (20 residues), see Phobius details amino acids 305 to 323 (19 residues), see Phobius details amino acids 361 to 388 (28 residues), see Phobius details PF05977: MFS_3" amino acids 9 to 394 (386 residues), 129.3 bits, see alignment E=1.6e-41 PF07690: MFS_1" amino acids 19 to 349 (331 residues), 110.3 bits, see alignment E=1e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4349)

Predicted SEED Role

"MFS general substrate transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZ22 at UniProt or InterPro

Protein Sequence (403 amino acids)

>AMB_RS22000 MFS transporter (Magnetospirillum magneticum AMB-1)
MTGSARDVLAQKGFRLFLTARLLSSLAQQIATVAVGWLVYDVSGDPLQLGLVGLAQFVPA
LLLTLPGGHLADRADRRLILLCATLLTMLAMGGLLLLSLEGKPSLPAIFAVMAVLGAVRA
FWAPAGQSMTAMLVERHLLSRAVALNSTIWQVTVIAGPAMGGLLYAFGPAVVFGSATLLL
GSAAIAVFLLAPMPPHGLGERPHILDGIRFVRSRPEILGSISLDLFAVLLGGATALLPIY
ARDILMTGPLGLGLLRSAPAMGAALSAALLAHRPPERHAGHKLFIAVAVFGLGTIVFGLS
TSFPLSMAALAILGAADMVSVVLRQTLVQINTPDDMRGRVSAVNLVFITASNELGEFESG
VAAALLGTVPAVVVGGVGCLLVAGVWAWRFPALRNFELPRSHP