Protein Info for AMB_RS21870 in Magnetospirillum magneticum AMB-1

Annotation: DUF2189 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 263 transmembrane" amino acids 45 to 65 (21 residues), see Phobius details amino acids 71 to 91 (21 residues), see Phobius details amino acids 123 to 145 (23 residues), see Phobius details amino acids 165 to 188 (24 residues), see Phobius details amino acids 200 to 214 (15 residues), see Phobius details amino acids 219 to 247 (29 residues), see Phobius details PF09955: DUF2189" amino acids 73 to 195 (123 residues), 127.4 bits, see alignment E=1.9e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb4323)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2VZ48 at UniProt or InterPro

Protein Sequence (263 amino acids)

>AMB_RS21870 DUF2189 domain-containing protein (Magnetospirillum magneticum AMB-1)
MAVTGTVPPQAAPLRRERVRAVSVPQVLGWIGAGWRDTRRAAPFSLFYGAAFVLAGFAVT
GGLALAGLEYLITPLVEGFMLVAPLLALGLYEVSRRLERGEPLDWRPILTCWRPNRFHMM
TAGLIYMLFLMIWARLAVIIFAVCFPSQPTDWRSLLEVLPTLDGIAFIITSTVFGGALAT
IAFVTNVVTLPVMLDRHTDFFAGAALSVMAVARNPGPMVLWAALLAGITGLGLALGLVGL
VVALPVVGHASWHAYRDLVVPED